Subcategories

Research Tools

• 6 Frame Translation (Practical Molecular Biology)
  Nice translator with useful options.
  http://www.molbiol.ru/eng/scripts/01_13.html
  Added: Sat Oct 12 2002, Hits: 520, Reviews: 0  Write review   Cached
• CELLO - subCELlular LOcalization predictor (Department of Biological Science and Technology, National Chiao Tung University, Taiwan)
  CELLO is a multi-class SVM classification system. CELLO uses 4 types of sequence coding schemes: the amino acid composition, the di-peptide composition, the partitioned amino acid composition and the sequence composition based on the physico-chemical properties of amino acids.
  http://cello.life.nctu.edu.tw/
  Added: Fri Mar 23 2007, Hits: 65, Reviews: 0  Write review   Cached
• DNA Sequence Translator (Pierre Rodrigues, JustBio)
  With this tool you can translateyour DNA sequences from 1 to 6 phases in formated outputs. Very clean.
  http://www.justbio.com/translator/index.php
  Added: Sun Aug 18 2002, Hits: 486, Reviews: 0  Write review   Cached
• DNA to Protein Translation (Dr. Joseba Bikandi, University of the Basque Country)
  This is a typical translation tool, which allows translating the DNA by using the standard genomic code, the alternative ones and also by using a user specified code. The interface is very user-friendly and requires JavaScript enable browsers to work properly.
  http://www.in-silico.com/s_translate/
  Added: Thu Oct 30 2003, Hits: 397, Reviews: 0  Write review   Cached
• In silico Experiments with Bacterial Genomes (Joseba Bikandi)
  Theoretical PCR ,multiplex-PCR,PCR-RFLP, AFLP-PCR, SRF and restriction digest and PFGE with all up-to-date public complete bacterial genomes (177 at the moment). The site is freely available
  http://www.in-silico.com
  Added: Thu Oct 30 2003, Hits: 314, Reviews: 0  Write review   Cached
• Peptide pI and MW Calculator (Reto)
  Calculate the pI (including modifications)and molecular weight (average and monoisotopic) of peptides
  http://www.fmi.ch/members/reto.portmann/pepeval.ht...
  Added: Tue Aug 10 2004, Hits: 373, Reviews: 0  Write review   Cached
• ProtCalc (Pierre Rodrigues, JustBio)
  With this tool you can simply and quickly determine statistical, theoretical MW, pI and extinction data from your protein sequence.
  http://www.justbio.com/protcalc/index.php
  Added: Sun Aug 18 2002, Hits: 251, Reviews: 0  Write review   Cached
• Search of rare codons in nucleotide sequence (Practical Molecular Biology)
  This program helps to find rare codons in the coding region. Rare codons may induce problems when protein should be expressed in heterologous organism.
  http://www.molbiol.ru/eng/scripts/01_11.html
  Added: Sat Oct 12 2002, Hits: 283, Reviews: 0  Write review   Cached
• Sequence Cleaner (Nucleic Acid and Protein) (Pierre Rodrigues, JustBio)
  With this tool you can simply and quickly clean your sequences from unwanted text marks and spaces. This is useful after retrieving sequences from online databases for example. (Require registration, free)
  http://www.justbio.com/cleaner/index.php
  Added: Sun Aug 18 2002, Hits: 340, Reviews: 0  Write review   Cached