Protocols
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Find ORF by name within sequenced bacterial genome
(Joseba Bikandi)
All up-to-date sequenced bacterial genomes are included in this service. After selection of genome, ORF is found by name. Further links will allow to retrieve sequence, location within genome etc.
http://www.in-silico.com/s_findORF/
Added: Wed Mar 03 2004, Hits: 1283, Reviews: 0 Write review Cached -
ORF Finder
(NCBI)
The ORF Finder (Open Reading Frame Finder) is a graphical analysis tool which finds all open reading frames of a selectable minimum size in a user's sequence or in a sequence already in the database. This tool identifies all open reading frames using the standard or alternative genetic codes. The deduced amino acid sequence can be saved in various formats and searched against the sequence database using the WWW BLAST server.
http://www.ncbi.nlm.nih.gov/gorf/gorf.html
Added: Fri Oct 31 2003, Hits: 2672, Reviews: 0 Write review Cached -
ORF Viewer
(Pierre Rodrigues, JustBio)
With this simple tool, you can find quickly ORF regions on your DNA sequence. You get a graphical output on the 6 phases (direct and reverse orientations).
http://www.justbio.com/translator/orfviewer.php
Added: Sun Aug 18 2002, Hits: 2299, Reviews: 0 Write review Cached