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Primer analysis sites - Any suggestions? (Aug/18/2008 )

Hi. does anyone know of good sites on the web where I can check the quality of the primers I have designed? I know of Primer3 but don't find it too reliable ( the readings were so different from what they really are when I checked with my older primers-esp the melting temperature!). No java applet-based tools pls cuz my browser seems to shut off automatically when I open one.
Thanks!

-khommy-





Try idtdna, good luck.

-microlight-

QUOTE (khommy @ Aug 19 2008, 12:10 AM)
Hi. does anyone know of good sites on the web where I can check the quality of the primers I have designed? I know of Primer3 but don't find it too reliable ( the readings were so different from what they really are when I checked with my older primers-esp the melting temperature!). No java applet-based tools pls cuz my browser seems to shut off automatically when I open one.
Thanks!


It's not on the web (it's a windows executabe), but FastPCR is great.

-maset-

http://www.premierbiosoft.com/netprimer/ne...etprlaunch.html

-mmustafa-