Protocol Online logo
Top : Forum Archives: : siRNA, microRNA and RNAi

miRNA identification - miRNA prediction (Aug/13/2008 )

Hi Guys,

I like to know is their any web server could identify the miRNA in 3'UTR sequence,



In most of the mRNAs with 3 prime UTRs, you can find Micro RNA binding sites called MREs (microRNA recognition Elements). This can be searched in databases like, miRbase, Targetscan, etc.


Here are a few links to get you started: (site down when I checked)

-miRNA man-