Primer for all HPV - (Apr/15/2008 )

Hi
I am now working on Human papilloma virus
I am very new to this field
I want to design a consensus primer common for all HPV types
and type specific primers for each types of virus
I want suggestion to carry out this task

thanks

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The logical thing to do would be to obtain representative sequences for each type and align them. Look for the identical and differing sequences and go from there.

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Thanks for your suggestion
I got the sequence of each type
could you suggest me best site to align the sequence to analyse the identity and sequence variation

thanks

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Several bioinformatic software can do this. Try clastal X 1.81.

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Hi
I coundnt able to find the above software
so I did it with embl-ebi by online
what are all the things i should look for selecting the region for consensus primer
I tried to upload the file but it is not attached

thanks

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