Software for proteins! - (Sep/09/2006 )
Does anyone know the good source of software which allows to predict protein structure after inserting the protein sequence in FASTA format?
have a look at http://www.embl.org and its many links
there are a lot of online prediction programs for secondary structure- predictprotein, PREDATOR, jpred.
Dear do you want to predict the secondary structure or tertiary st of ur protein? there are no. of free softwares available on the net. To knoe the 3d structure you first generate a pdb file using the freely available softwares like swissprot, jiggsaw, phyre etc. Then the structure so obtained can be correlated with the experimental data.