Protocol Online logo
Top : Forum Archives: : Molecular Cloning

Is A-tailing of restriction fragment possible? - (Mar/02/2006 )

I wonder if it´s possible to digest DNA with a blunt cutter, purify it on a gel and a-tail it with Taq and dATP afterwards in order to clone it into a pGEM-T cloning vector. Until now I´ve only heard of A-tailing PCR-fragments. Does it make a difference?

The aim is to subclone a large fragment (10kb or so), blunt end ligation didn´t work so far, so I hope the A/T-method would improve things.

Thank you for your help.

-FMM-

no problem
we even using dNTP in stead of dATP during incubation with Taq, so it will not limited to blunt end fragment..
In fact you might add A before purification from gel, surely you should purify digestion (phenol/chloroform extract and ethenol precipitate) before incubate with Taq and dATP/dNTP
hope it work for you



QUOTE (FMM @ Mar 2 2006, 07:37 AM)
I wonder if it´s possible to digest DNA with a blunt cutter, purify it on a gel and a-tail it with Taq and dATP afterwards in order to clone it into a pGEM-T cloning vector. Until now I´ve only heard of A-tailing PCR-fragments. Does it make a difference?

The aim is to subclone a large fragment (10kb or so), blunt end ligation didn´t work so far, so I hope the A/T-method would improve things.

Thank you for your help.

-rshi-

Thank you, rshi, for your prompt answer.

I´ll give it a try today. Keep your fingers crossed.

-FMM-