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Research Tools
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Cluster
(Eisen lab, Lawrence Berkeley National Lab )
Perform a variety of types of cluster analysis and other types of processing on large microarray datasets. Currently includes hierarchical clustering, self-organizing maps (SOMs), k-means clustering, principal component analysis.
http://rana.lbl.gov/EisenSoftware.htm
Added: Sat Mar 27 2004, Hits: 636, Reviews: 0 Write review Cached -
GMEP
(Eisen lab, Lawrence Berkeley National Lab)
Compute genome-mean expression profiles from expression and sequence data.
http://rana.lbl.gov/EisenSoftware.htm
Added: Sat Mar 27 2004, Hits: 197, Reviews: 0 Write review Cached -
Maple Tree
(Eisen lab, Lawrence Berkeley National Lab)
Maple Tree is a java-based, open source, cross-platform visualization tool to graphically browse the results of clustering analyses from our Cluster and Fuzzy K clustering software, and many other clustering and analysis programs.
http://rana.lbl.gov/EisenSoftware.htm
Added: Sat Mar 27 2004, Hits: 235, Reviews: 0 Write review Cached -
Microarray CGH
(Squire Lab)
Microarray CGH profiling software
http://www.utoronto.ca/cancyto/software/
Added: Thu Mar 10 2005, Hits: 426, Reviews: 0 Write review Cached -
TreeView
(Eisen lab, Lawrence Berkeley National Lab)
Graphically browse results of clustering and other analyses from Cluster. Supports tree-based and image based browsing of hierarchical trees. Multiple output formats for generation of images for publications
http://rana.lbl.gov/EisenSoftware.htm
Added: Sat Mar 27 2004, Hits: 294, Reviews: 0 Write review Cached