Protocol Online logo
Top : Forum Archives: : Bioinformatics and Biostatistics

Protein consensus pattern (motif) database - (Apr/21/2005 )

Hi everybody,

i'll be very thankful for the information about if there's any other protein motif databases besides PROSITE, PRINTS, or BLOCKS.

i'm trying to find out a set of motis for a given protein family. My target is the C2H2 proteins and i've searched them in PROSITE database.
However, PROSITE maintains only single one motif,C-x(2,4)-C-x(3)-[LIVMFYWC]-x(8)-H-x(3,5)-H, for a protein family, while what i need is a set of motifs.

Really hope you could please offer me any suggestion or information, big thanks in advance!


maybe it could help you to find a set of motifs


big thanks to hndanny^^


It's worth to try this


QUOTE (dtle @ Jun 11 2005, 01:22 AM)
It's worth to try this

prosite, smart, pfam ... ...