How to convert coordinates into genes - (Jun/13/2008 )
Hello every body,
I have data that consist of genomic co-ordinates. I want to know if there are certain tools that can convert these data into genes by finding the closest promoter or open reading frame?
Thank you
-geneinfo-
Go to OMIM.
-rosewater-
QUOTE (geneinfo @ Jun 13 2008, 04:25 PM)
Hello every body,
I have data that consist of genomic co-ordinates. I want to know if there are certain tools that can convert these data into genes by finding the closest promoter or open reading frame?
Thank you
I have data that consist of genomic co-ordinates. I want to know if there are certain tools that can convert these data into genes by finding the closest promoter or open reading frame?
Thank you
http://www.genenformics.com/SeqLoc2Gene.html
SeqLoc2Gene.exe NC_000014:74815000-74819000,NM_005252,51493278:56745284-56749000
Input Map Accession From To Strand GeneId Locus Description
NC_000014:74815000-74819000 NT_026437.11 56745284 56748666+ 2353 FOS
NM_005252 NM_005252.2 1 2084 + 2353 FOS v-fos FBJ murine osteosarcoma viral oncogene homolog
51493278:56745284-56749000 NT_026437.11 56745284 56748666+ 2353 FOS
-genenformics-
you could use the ensembl API.
-perlmunky-