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how to recognise the diferent units of rDNA? more easily RNA structure drawing - help! (Mar/12/2007 )

hi, everyone, here are two question, somebody help me!


I have gotten a some rDNA-LSU sequences of fungi, how can I recognise the diferent coden regions, such as ITS1, ITS2, 5.8SrDNA, and other region? or what is the sequence characters of the begining and ending of those DNA region?

I have drawn the secondary structure of 5.8SrDNA using RANstructure 4.3, however, compared with the standard structure of 5.8S rDNA of yeast, my results is very very difenent.
How can I get a relative reasonable seconary structure of rDNA, and Which soft could help me do this work easily?


May be this tutorial could help you


QUOTE (djv0022 @ Mar 14 2007, 07:22 PM)

That is OK, thank you very much