How to generate RPSBLAST PSSM - (Feb/08/2007 )
I was trying to format my database for RPSBLAST for running CDD (ncbi). If anybody has any idea regarding how to generate profiles, I will appreciate that.
generating PSSM is quite straight forward...though a bit tricky for a newcomer ...try this link
and take your bit of time and let me know if you still have problems....