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How to generate RPSBLAST PSSM - (Feb/08/2007 )


I was trying to format my database for RPSBLAST for running CDD (ncbi). If anybody has any idea regarding how to generate profiles, I will appreciate that.



generating PSSM is quite straight forward...though a bit tricky for a newcomer ...try this link

and take your bit of time and let me know if you still have problems....