Repetive sequence - (Jun/21/2006 )
I am trying to look at repetitive sequence of virus (EBV) genome. Can anyone suggest me a good software which allow mw to analyse the repetitive sequence of genome.
what kind of analysis do you want to do with theses...?
not exactly sure what you are after, but try this:
To locate tandem repeat, invert repeat..... ?
Yes you are right
What exact analyses do you want to do with them? Compare them to others, find secondary structures?
Have a look at miropeats, it provides good graphical representations of repeats....
Try REPuter, this is a program for Fast Computation
of Degenerative Repeats in Complete Genomes.