how can we remove extra unaligned end sequences from aligned sequences - (Jan/13/2014 )

hi

how can we remove extra unaligned end sequences from aligned sequences. thanks.

In case someone is looking for similar problem. Here's solution..... Multiple align sequences e.g. in MEGA and then remove unnecessary end regions by manually selecting it. Good Luck.

In ClustalX you can, after aligning, store the alignment by choosing the Save sequence as ... The following window gives you to option to select the start and stop site of the alignment so you can remove unaligned sequences like this from all your sequences at once.