Which epitope tag to use for ChIP? - (Jan/09/2014 )
From your experience, which epitope tag worked the best for ChIP? I am going to tag my protein but I also would like that epitope tag to be suitable for ChIP. I have thought about Flag, Myc, HA, V5, His, or maybe you have another tag that worked for you. Please explain why the epitope tag worked poorly or well.
Note: I understand the antibody plays a major role.
Has anyone tagged their protein with HA or Flag and done ChIP PCR or ChiP seq? Comments? Suggestions?