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Is there any software that can predict DNA binding proteins based on input DNA s - (Dec/03/2012 )

By mutating a DNA binding site for a protein, I seem to have created a new binding site for some other protein. This speculation is based on a new phenotype being observed. Now I want to know if there is any software that can predict a protein binding to the mutated sequence. Thank you all in advance.


Probably not as these sorts of interactions are so diverse.