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vector dephosphorylation - (Oct/11/2012 )

I've doube digested my pCMV5 vector with EcoRI an BglII, and as I've got some problem with it self-ligating, i've dephosphorylated it with CIAP. Now, do I need my ligase buffer to be free of ATP?? ( the insert is still phosphorylated after the same double digestion)

-gulash-

you can try ligating it directly.
Why r u asking "Now, do I need my ligase buffer to be free of ATP??"

-Inbox-

because as the CIAP is not heat inactivated i have to clean-up the reaction, and resuspend it in a ligase buffer (containg ATP); i'm asking whether the ligase with atp won't rephosphorylase the vector making it capable to self ligate once more

-gulash-

T4 polynucleotide kinase need to be present in reaction to make vector rephosphorylated. your ligase reaction do not have it. so no need to worry abt ATP.

-Inbox-

thx very much!!

-gulash-

You should switch to shrimp alkaline phosphatase or antarctic phosphatase, both of which can be heat killed, avoiding a painful cleanup step. The less you do to your DNA, the fewer opportunities for problems.

-phage434-