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plotting DNA methylation profile vs TSS - (Feb/22/2012 )

I am trying to plot pattern of methylation - beta values on y-axis as a function of distance from TSS on X axis. I have seen several of such plots However I dont fins any details how such plots can be genarted? Any advice?

Thanks. I tried to paste the reprsentative fig but could not

http://www.biomedcen...471-2164/11/137 Fig 2 B and C are the the examples.



Hi Honey, have you tried EdgeR?