Is Kozak's full sequence necessary? or just ACCATG is enough? - (Feb/14/2012 )
I usually only introduce ACC before the start codon in my forward primers. I have managed to get quite good expressions but most of the time I have low expression. Just wondering if this is because of the lack of having the full Kozak's sequence (GCCGCCACC) before the stop codon? that GCCGCC is really disturbing
usually i add (CCACC ) and expression is fine. The promoter can make a huge difference in expression.
Furtering Scolix's comment, it has been found that the critical sequence in the kozak is not necessarily the whole sequence, but that some bases are more important than others. IIRC the important ones are the GCCACCatgG, with the final G after the start codon being quite important. Obviously you can't always use a G in that postition though.
guys, Promega just emailed me that the Kozak's sequence is not really needed . Here's the email:
Yep, that's correct, it isn't absolutely necessary, however, in many cases a kozak will enhance expression.