Protocol Online logo
Top : New Forum Archives (2009-): : PCR, RT-PCR and Real-Time PCR

primer design by generunner DG - (May/18/2010 )

hi
I have a question about primer design by generunner :
is there any accepted treshould of dG in analysis of hairpin or dimers?

regards

-sara.r-

I had this same problem some days ago. I read a lot of bibliography and I use these tresholds:
dG>-3Kcal/mol for hairpins and dG>-6Kcal/mol for dimers.

I read that larger negative valuer for dG indicate stable, undesirable structures.

I hope this information will be helpful for you

-criscastells-