Bacterial promoter prediction - (Sep/22/2009 )

Hello all,
Does anyone know to predict bacterial promoters from a gene sequence?. If at all, what is the websites that help in bacterial promoter prediction?

-chn09-

chn09 on Sep 22 2009, 04:20 AM said:

Hello all,
Does anyone know to predict bacterial promoters from a gene sequence?. If at all, what is the websites that help in bacterial promoter prediction?

bprom from softberry (http://linux1.softberry.com/berry.phtml), or just by looking for the best -35 and -10 consensus sequences near the start of the gene.

-fishdoc-

chn09 on Sep 22 2009, 02:20 AM said:

Hello all,
Does anyone know to predict bacterial promoters from a gene sequence?. If at all, what is the websites that help in bacterial promoter prediction?

Here are some links which might be useful:
http://molbiol-tools.ca/Promoters.htm
http://www.cbs.dtu.dk/services/Promoter/
http://bioportal.weizmann.ac.il/toolbox/se.../promoters.html

Cheers
Biointelligence - All about Bioinformatics :lol:

-Biointelligence-