Archived Protocol

<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <!Optimizat pt multi-fasta> <head>  <title>GenBank to FASTA converter|GenBank Converter converts GenBank/Gbk file format to FASTA format. GenBank converter supports: Gbk SCF ABI SEQ, FASTA DNA chromatogram file formats.</title> <meta name="description" content="GenBank to FASTA converter|Freeware program converts GenBank (gb/gbk) file format to FASTA format. FASTA converter/spliter. GenBank Gbk SCF ABI SEQ, FASTA. DNA chromatogram file format." /> <meta name="Keywords" content="GenBank, gbk, Multi-FASTA, muti, fasta, multiFasta, converter, format, format converter, convertor, ab, ab1, abi, scf, seq, fasta, software, free, align, article, aligner, alignment, assemble, assembler, assembling, base, cheap, code, computer, consensus, contig, conversion, convert, convertor, detection, dna assembly software, free download, freeware, gap, mac os x, linux, windows xp, mutation, price, primer, real-time pcr, quality, research, sequence, Sequencing, trace, traces, sequencher codoncode vector nti alternative, ztr, 2006" /> <meta name="ROBOTS" content="NOODP, ALL" /> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" /> <meta http-equiv="Page-Enter" content="blendTrans(Duration=0.2)" /> <meta http-equiv="Page-Exit" content="blendTrans(Duration=0.2)" /> <link href="../../style.css" REL ="stylesheet" type="text/css" /> <link rel="shortcut icon" HREF ="../../help/tools-converters/MultiFASTA Builder/icon.png" />  <SCRIPT defer TYPE="text/javascript" SRC="http://www.dnabaser.com/scripts/menu_swap.js"> </SCRIPT>  <script type="text/javascript"> var _gaq = _gaq || []; _gaq.push(['_setAccount', 'UA-3648054-1']); _gaq.push(['_trackPageview']); (function() { var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true; ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js'; var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s); })(); </script> </head> <body onLoad="MM_preloadImages('../../images/buttons/btn_empty.png','../../images/buttons/btn_right down.png','../../images/buttons/btn_left down.png')"> <table width="100%" height="100" border="0" align="center" cellpadding="0" cellspacing="0" >  <tr> <td width="1266" height="100" align="center" valign="top"><table border="0" cellpadding="0" cellspacing="0" align="center" width="948" background="../../images/site_elements/top_1100px - eprubete.jpg">   <tr> <td width="740" align="right" valign="middle" ><a href="../DNA-Baser-sequence-assembler/index.html"><img src="../../images/site_elements/top_logo_DNABaser.png" alt="scf trace assembly" width="281" height="63" border="0" /></a></td> </tr> <tr> <td valign="top"><div align="left"><a href="../../index.html" onmouseout="MM_swapImgRestore()" onMouseOver="MM_swapImage('btn_home','','../../images/buttons/btn_left down.png',1)"><img src="../../images/buttons/btn_left.png" alt="Welcome to DNA BASER’s official web site" NAME="btn_home" width="102" height="37" border="0" ID="btn_home" /></a><a href="../../news.html" onmouseout="MM_swapImgRestore()" onMouseOver="MM_swapImage('btn_news','','../../images/buttons/btn_empty.png',1)"><img src="../../images/buttons/btn_news.png" alt="DNA sequencing info and news" NAME="btn_news" width="92" height="37" border="0" ID="btn_news" /></a><a href="../download.html" onmouseout="MM_swapImgRestore()" onMouseOver="MM_swapImage('btn_download','','../../images/buttons/btn_empty.png',1)"><img src="../../images/buttons/btn_download.png" alt="GBK convertet. Download a full working version" NAME="btn_download" width="92" height="37" border="0" ID="btn_download" /></a><a href="http://www.dnabaser.com/contact/index.html" onMouseOut="MM_swapImgRestore()" onmouseover="MM_swapImage('btn_contact','','../../images/buttons/btn_right down.png',1)"><img src="../../images/buttons/btn_right.png" alt="Contact us if you need more information" NAME="btn_contact" width="102" height="37" border="0" ID="btn_contact" /></a></div></td> </tr> </table></td> </tr> </table> <table width="950" border="0" align="center" CELLPADDING="0" CELLSPACING="0">  <tr> <! Rounded white top of page > <td colspan="3"><img src="../../images/site_elements/top_rounded_white.gif" alt="sequence assembly software" width="950" height="19" /></td> </tr> <tr> <! Left cell - 1 pixel wide > <td width="1" ROWSPAN="2" bgcolor="#979797"><img src="../../images/spacer.gif" alt="abi trace assembly" width="1" height="1" /></td> <! MAIN PAGE> <td width="948" height="515" valign="top" background="../../images/site_elements/background - gray.jpg" bgcolor="#FFFFFF"><! gray > GenBank to FASTA converter <img src="icon.png" alt="GenBank (GBK) converter" width="33" height="33" /> (freeware)     Description GenBank to Fasta Converter is a a freeware molecular biology tool that can convert GenBank (gb/gbk) file format to FASTA format.   <a href="gkb_converter_screenshot.png"><img src="gkb_converter_screenshot_small.png" alt="Coverting GenBank to FASTA format" width="321" height="212" border="0" /></a>     How to use it Start GenBank to Fasta Converter Converter module (located in <a href="../DNA-Baser-sequence-assembler/index.html">DNA Baser</a>). Locate the GBK files you want to convert and press the CONVERT button. A folder called 'Converted files' will be automatically created to store the new generated FASTA files.      Supported files   GenBank to Fasta Converter supports simple and multi GenBank files (gb/gbk).     <table width="44%" border="1" align="center" cellpadding="2" cellspacing="1" bordercolor="#999999"> <tr> <td colspan="2" background="../../images/bkg-table-light.jpg" bgcolor="#E6E7f1"><center> GenBank to FASTA converter <img src="icon.png" alt="genbank converter" width="33" height="33" border="0" /> </center></td> </tr> <tr> <td width="48%">License</td> <td width="52%"><center spry:hover="green"> FREEWARE </center></td> </tr> <tr> <td>Download time</td> <td><center> under 10 seconds </center></td> </tr> <tr> <td height="58" colspan="2"><!A href="http://www.dnaBaser.com/cgi-bin/click_counter/click.php?id=8"> <center> <a href="../biology-tools-package-download-count.html"><img src="../../images/download free anim.gif" alt="GenBank to FASTA converter FREE download" width="210" height="29" border="0" /></a> </center></td> </tr> </table>     How to install it GenBank to Fasta Converter has been recently integrated in <a href="../DNA-Baser-sequence-assembler/index.html">DNA Baser Sequence Assembler</a>. Please download this tool <a href="../DNA-Baser-sequence-assembler/index.html">here</a>.       System requirements   GenBank to Fasta Converter can run on any version of Windows from Windows 98 to Windows 7 and also on Mac via Parallels or Bootcamp. It does not install additional libraries, updates, DLL, Java or registry keys into your system.   <hr /> Similar molecular biology tools   <table width="83%" border="1" align="center" cellpadding="1" cellspacing="1" bordercolor="#999999"> <tr> <td width="17%" align="center" bgcolor="#E6E7E8" class="Title12">Name</td> <td width="6%" align="center" bgcolor="#E6E7E8" class="Title12" > </td> <td width="77%" align="center" bgcolor="#E6E7E8" class="Title12" >Description</td> </tr> <tr> <td><center> <a href="../DNA-Baser-sequence-assembler/index.html">DNA Baser Sequence Assembler </a> </center></td> <td align="center" valign="middle"><center> <img src="../../images/DnaBaser-icon.png" alt="DNA Baser Sequence Assembler " width="32" height="32" border="0" /> </center></td> <td>DNA Baser is a tool for <a href="../../../features.html">DNA sequence assembly</a>, DNA sequence analysis, contig editing, and mutation detection. It also offers a powerful chromatogram viewer/editor.</td> </tr> <tr> <td><center> <a href="../../../download/GBK-converter/index.html">GBK to FASTA converter </a> </center></td> <td align="center" valign="middle"><center> <a href="../GBK-converter/index.html"><img src="../GBK-converter/icon.png" alt="GBK to FASTA converter freeware" width="32" height="32" border="0" /></a> </center></td> <td>GenBank to FASTA is a freeware program will convert GenBank (gbk) file format to FASTA format.</td> </tr> <tr> <td><center> <a href="../../../download/Abi-to-Fasta-converter/abi-to-fasta-converter.html">ABI to FASTA converter</a> </center></td> <td align="center" valign="middle"><center> <img src="../Abi-to-Fasta-converter/icon.png" alt="ABI to FASTA Converter" width="33" height="33" border="0" /> </center></td> <td>ABI to FASTA Converter is a free tool will convert all (selected) ABI files to FASTA files. All you need to do is to locate your ABI chromatogram files and press the CONVERT button. <center> </center></td> </tr> <tr> <td><center> <a href="../Cell-counter/grid-cell-counter.html">Grid cell counter</a> </center></td> <td align="center" valign="middle"><img src="../DNA-Counter/icon.png" alt="Grid cell counter" width="32" height="32" border="0" align="absmiddle" /></td> <td>Gird cell counter will help you to count faster the cells shown on computer's screen by displaying a grid over your image. Freeware.</td> </tr> <tr> <td><center> <a href="../Convertrix DNA sample converter/index.html">Convertrix</a> </center></td> <td align="center" valign="middle"><a href="../Convertrix DNA sample converter/index.html"><img src="../Convertrix DNA sample converter/icon.png" alt="A Batch DNA Sample Converter " width="32" height="32" border="0" /></a></td> <td>Convertrix is a molecular biology command line tool for converting between several popular DNA sample formats. It can automatically trim the untrusted regions (low quality bases) at the end of samples.</td> </tr> <tr> <td><center> <a href="../DNA-Counter/index.html">DNA Counter</a> </center></td> <td align="center" valign="middle"><img src="../DNA-Counter/icon.png" alt="DNA Counter" width="32" height="32" border="0" align="absmiddle" /></td> <td>DNA Counter shows the proportions between nucleotides in a DNA sequence (GC to AT ratio). </td> </tr> <tr> <td><center> <a href="../chromatogram-explorer/index.html"> Chromatogram Explorer</a> </center></td> <td align="center" valign="middle"><center> <img src="../chromatogram-explorer/icon.png" alt="multi-FASTA to FASTA" width="33" height="33" /> </center></td> <td>DNA Chromatogram Explorer is a Windows Explorer clone dedicated to DNA sequence analysis and manipulation. You can view the chromatograms while browsing through folders using its integrated file explorer. With a single click you can trim the low quality bases at the end of your samples. </td> </tr> <tr> <td><center> <a href="../../help/tools-converters/MultiFASTA Builder/index.html"> Everything to FASTA converter </a> </center></td> <td align="center" valign="middle"><center> <img src="../../help/tools-converters/MultiFASTA Builder/icon.png" alt="multi-FASTA to FASTA" width="33" height="33" /> </center></td> <td>Everything to Fasta Converter converts the specified samples (SCF, ABI, FASTA, multiFasta, GBK, multiGBK, SEQ, TXT) to FASTA format. Starting with version 3.0 protein FASTA files are also supported. </td> </tr> </table>          </td> <! Right cell - 1 pixel wide > <td width="1" ROWSPAN="2" bgcolor="#979797"><img src="../../images/spacer.gif" alt="molecular biology software" width="1" height="1" /></td> </tr> <tr> <! End of white page > <td height="3" valign="top"><img src="../../images/site_elements/3pixels_BottomLine.png" alt="DNA chromatogram assembly" width="948" height="3" /></td> </tr> </table> <table border="0" CELLPADDING="0" CELLSPACING="0" width="950" align="center">  <tr> <td width="559" height="38" class="DevilsContract">  Copyright © Heracle BioSoft SRL</td> <td width="391" align="center" valign="middle" background="../../images/site_elements/bott_yellow.png"><a href="../../help/index.html">Support</a>          <a href="../../help/manual.html">Online Manual</a>         <a href="../../contact/index.html">Contact</a></td> </tr> </table>  <script type="text/javascript"> if(typeof(_gat)!='object')document.write('<sc'+'ript src="http'+ (document.location.protocol=='https:'?'s://ssl':'://www')+ '.google-analytics.com/ga.js"></sc'+'ript>')</script> <script type="text/javascript"> try { var gwoTracker=_gat._getTracker("UA-11723059-2"); gwoTracker._trackPageview("/3917844010/test"); }catch(err){}</script>  </body> </html>