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Fluoresce

Member Since 09 Feb 2013
Offline Last Active May 06 2013 09:35 PM
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#151968 Help: Best way to disrupt blood cells to generate blood debris and gDNA to be us

Posted bob1 on 10 March 2013 - 12:12 PM

Basically you don't need to do any more than ensure that the blood is fully frozen and then fully thawed.  The quickest way to do this is use a dry ice/isopropanol bath (dry ice pellets in isopropanol, take care with tube labelling, this will remove most pen written labels) and a 37 degree bath, dunk the tubes into the baths alternately.  You could also use liquid nitrogen, but it is a bit more dangerous, isopropanol at -80 is also effective, but warms up rapidly unless you work in the freezer.


#151966 Help: Best way to disrupt blood cells to generate blood debris and gDNA to be us

Posted bob1 on 10 March 2013 - 11:43 AM

Freeze/thaw should work well - the ice crystal formation is enough to lyse the cells fairly effectively.  I would do about 3 cycles for complete lysis.


#150077 Qiagen column eluted DNA gives higher concetration than the original sample

Posted jerryshelly1 on 10 February 2013 - 07:21 PM

I follow kit with a few exceptions.  I allow equilibration buffer to sit in column longer, I spin down ethanol at maxi speed for 2x time suggested, I allow elution buffer to sit in column for ~5minutes, I then rerun same elution buffer back through column.  Qiagen is a good kit, following the protocol should yield good results.  

Bob has a good point.  Make sure your dilution calculations are correct.

Good luck


#150076 Qiagen column eluted DNA gives higher concetration than the original sample

Posted bob1 on 10 February 2013 - 06:55 PM

I would expect a column DNA extraction (especially for pre-extracted and spiked DNA) to be about 30% of total - if you eluted in 1/10th the original volume and you have 30% yield - that will give you 3x the concentration, but only 1/10th the volume so they total yield is less...


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