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ChIP Kick

Member Since 12 Dec 2012
Offline Last Active Private
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Posts I've Made

In Topic: Purify ChIP DNA using Qiagen spin filter

07 January 2013 - 11:04 PM

View PostMighty Mouse, on 08 December 2009 - 06:35 PM, said:

The Qiaquick kit from Qiagen works just fine with the millipore kit. I make use of the Millipore magna-chip kit as well and have run into the same problem. I wrote out all the ingredients that come with the kit and how many I use per ChIP sample (I'm dissecting out brain tissue, so I use different amounts than Millipore recommends) and which reagents are my limiting reagents. For me it was the Cell Lysis Buffer and the Protease Inhibitor cocktail.

Like you, I tried to order reagents individually, but they don't sell them; but if you call Millipore they will give you the composition of many of their reagents (e.g, now I make my own cell lysis buffer) or buy them from elsewhere (I've been using the Halt protease/phosphatase inhibitor cocktail from Pierce; has worked well so far). I think it's quite obnoxious that they don't sell components individually given that various labs have different reagent requirements....

MM

I have the same problem as you! I also used all cell lysis buffer and my kit is from Millipore. They say it for 22 assays. I think it's just for one sample with small amount. I have several samples every time so it's far not enough for me. I found there are many different cell lysis buffer and nuclear lysis buffer in web. But I do not know which one can work with Millipore Kit. I really appreciate if you can give me suggestion about making my own cell lysis buffer.

In Topic: ChIP sonication

15 December 2012 - 04:13 PM

Hi rmbio, the marker in the fist lane is 1Kb Plus DNA ladder and in the last lane is 100bp DNA ladder. I will try the phenol-chloroform treatment. Thank you very much for your suggestion!

In Topic: ChIP sonication

12 December 2012 - 12:36 PM

Hi,

Is your problem solved? I have some problems with my ChIP assay. Hope you can give me some suggestions.

I sheared some formaldehyde cross-linked tissues samples. Then, treated with RNase A at 37C for 30min. After adding protinase K, reversed crosslinking at 62C for 2hours. Then run a 1% agarose gel with 85voltage.

Here are the problems. I do not know why there are red lines(in attached file) in my gel when running? In gel images, why I do not have smeared DNA?

My sonicator is Qsonics Q125. Sonication with 30% power, 15sec on, 45sec off, 10cycyles.

I spend several weeks to do ChIP but still cannot get good DNA fragments. Frustrate Now!

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