The methylations shouldn't be removed, but the integrity of the DNA and hence the dectection of the methylation by bisulphite PCR may be affected by freeze/thaw. Storage frozen at -80 should be enough to prevent degradation with time.
Thank you for your answer, so you mean that for the bisulfited DNA, the strands which contain uracils, and others which contain cytosines (methylated), the stability for these two strands are the same???
For example, I've a bisuflted DNA which is already known that it's 50% methylated by sequencing, and then I stored this bisulfited DNA (the same one which is sequenced) at -80 for about several weeks, and I re-send this bisulfited DNA to sequence, you think it'll still be 50% methylated???