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shivu11

Member Since 09 Dec 2011
Offline Last Active Apr 08 2013 01:08 AM
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Posts I've Made

In Topic: cloning: band at different site than desired after RE digestion

18 January 2013 - 10:56 AM

thanks Lelee,

thanks for the reply. I am trying to clone the gene again, and hope to get the success this time, Thanks again to all for ur time and patience. :)

In Topic: cloning: band at different site than desired after RE digestion

07 January 2013 - 01:11 AM

I do not estimate the dna conc. We usually isolate plasmid from 5ml culture, inoculated overnight. Gel shows gud intensity band. and my plasmid size is 5000bp. and band which I am getting is at 3000-2500bp.
Thanks again

In Topic: cloning: band at different site than desired after RE digestion

06 January 2013 - 01:52 AM

View Postleelee, on 06 January 2013 - 12:16 AM, said:

Can you post up a gel pic of both your PCR and your digests?

It is worth considering that the unwanted bands you are seeing is uncut plasmid.

How exactly do you do your PCR from your clones? What is your template (e.g. scrape of colony in water, or mini-prep), and how much are you using for your PCR?
DearLeelee, I isolate plasmid and then use it as template, about 0.5microl litre is suffecient. I isolate plasmid using mini prep kits.

In Topic: cloning: band at different site than desired after RE digestion

06 January 2013 - 01:49 AM

View PostPangea, on 05 January 2013 - 01:18 AM, said:

It might be that your digestion of your Insert is not working out you have blunt ends. So it will just ligated several inserts. But i am not sure. And i hope you are not using BL21 for plasmid replication.  Not recA mutation. But BLR have it or other K 12 strains. And are sure that you are not cutting into your plasmid?
thanks pangea for the reply, I use DH5alpha for transformation, I m sorry but I didnt get what u meant by cutting into plasmid.

In Topic: protein with good soulbility but doesnt bind to Ni-NTA coloumn

04 January 2013 - 05:51 AM

hi, thanks to the reply. Sorry I cudnt reply sooner. I tried using 1M NaCl in the binding buffer and increased incubation of beads with supernatant for 1hr. It helped binding. Now, almost all of the protein gets bind to the coloumn.
Thanks again to all, for their suggestion !!

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