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Inmost sun

Member Since 09 Apr 2010
Offline Last Active Mar 10 2013 03:10 AM
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#110823 Trouble in protein quantification

Posted Inmost sun on 25 May 2011 - 03:54 AM

UV light? or precipitate a portion and resolve in a compatible buffer to use colometric methods...


View PostAndreia Carvalho, on 25 May 2011 - 02:38 AM, said:

Hello everybody,

I am having problems with protein quantification. I have my proteins resuspended in 0,2M Glycine pH 2.5 buffer. So far as I know, this buffer is incompatible with Bradford, Lowry and BCA assays (these methods are only compatible up to 0,1M Glycine). Does anyone know another method to measure my proteins and/or do you have any suggestions?

Thanks in advance,
Cheers,
Andreia



#110057 What does metaplasticity mean?

Posted gfischer on 17 May 2011 - 06:27 AM

I believe it refers to changes in the ability of neurons to undergo the changes in their firing properties typical of synaptic plasticity.  It's basically "plasticity of synaptic plasticity"


#110048 Number of publications after PhD

Posted Inmost sun on 17 May 2011 - 05:04 AM

to get a postdoc job after PhD, the methods that you are familiar with are more important than number of papers; publication record is more important for grants or getting a job as PI


#109390 phosphorylted protein smaller not bigger?

Posted mdfenko on 10 May 2011 - 10:05 AM

the incorporated phosphate(s) can increase mobility, it increases negative charge on the protein. we used urea gels to visualize phosphorylated vs unphosphorylated proteins and the phosphorylated ran faster (urea enhances charge separations).


#110047 protein phosphorylation status in sample buffer

Posted Inmost sun on 17 May 2011 - 04:56 AM

in general, it is not recommended to store proteins in sample buffer; but if, it would be useful to store in a phosphate containing buffer which, however, is rarely found in sample buffers


#110046 cheap and fast enzyme activity assay?

Posted Inmost sun on 17 May 2011 - 04:51 AM

enzymatic reactions are not uniform but have different requirements; cheap available enzymes are f.i. lactate dehydrogenase


#110045 What does metaplasticity mean?

Posted Inmost sun on 17 May 2011 - 04:47 AM

I know the term "synaptic plasticity" but what does "synaptic metaplasticity" mean? oO Any idea?


#97429 Transgenic mouse model to measure Ca2+ in confocal

Posted gfischer on 13 January 2011 - 10:24 AM

I'm not completely sure why you're looking at transgenic models for intracellular calcium measurements.  Fura-2 is a standard ionophore for measuring calcium levels in cells in response to chemical stimuli.  You might also look at Cameleon, a CamKII-GFP hybrid protein that can be transfected or transduced into cells to visualize calcium concentration.


#101245 Transgenic mouse model to measure Ca2+ in confocal

Posted Inmost sun on 19 February 2011 - 07:14 AM

that is the thing: If you have mutant mice stably expressing those calcium-senstive fluorescent proteins you can measure calcium in living mice...



View Postgfischer, on 13 January 2011 - 10:24 AM, said:

I'm not completely sure why you're looking at transgenic models for intracellular calcium measurements.  Fura-2 is a standard ionophore for measuring calcium levels in cells in response to chemical stimuli.  You might also look at Cameleon, a CamKII-GFP hybrid protein that can be transfected or transduced into cells to visualize calcium concentration.



#101244 Is My Protein Pure or Not?

Posted Inmost sun on 19 February 2011 - 07:03 AM

some might be satisfied with CCB-stained gels to state purity however staining with silver or nanogramm-sensitive dyes is the correct method to state purity on the gel level...

View Postrpjkmust916, on 11 February 2011 - 12:46 AM, said:

Hi Everyone,

  This is my second post in this section.
  Attached herewith is the pic of my SDS-Page of protein purification that I've done.
  The 8,9 and 10 column were the protein that I need to purify.
  Based from the bands that appear, I would like to confirm whether it is pure or not. Any advice,suggestion and ideas are welcome.
  Thank you.



#101243 x-ray films vs direct imaging

Posted Inmost sun on 19 February 2011 - 06:57 AM

Modern camera-based systems are to prefer since developing immunoblots have a longer linear range of detection; besides, classical films need a threshold level of light for darkening; a third advantage is that normally camera-based systems are offered with a professional gel documentation and analysis software


View Postalmost a doctor, on 18 June 2009 - 12:54 AM, said:

Hi guys,
I've been asked to source all the equipment and reagents needed to set up western blot in the lab, starting from scratch (all we have is a Nupage electrophoresis tank).  I know my preferences for transfer system, membranes, reagents....  but I'm having doubts on the developing method. In the past I've always used ECL and x-ray films, but I know more and more labs these days favour other chemiluminescent reagents and imaging as you get a better control on exposure and a better dynamic range.

So here's my question.  

What method do you use to develop a western?     :lol:


Please share your opinions  

Thanks!   :lol:



#101125 Protein kinase protocols

Posted Inmost sun on 18 February 2011 - 02:33 AM

you will need a lot (and I think more) of cell material to run this protocol which is o.k.

Do you take the whole triton soluble fraction? And what about the triton-insoluble fraction?



View Postanacris28, on 16 February 2011 - 12:23 PM, said:

Hello everyone.

I wanted to post this so that people that experiment with proteases could help. I'm trying to standardize a protocol for probing protein kinase C from cell lysates from QC and GM-95 cell lines.  The protocol that we are using is the following...


Lysate buffer

20 mM Tris HCl
0,5 mM EDTA
0,5 mM EGTA
0,3 mM Sucrose
0,5 mM PMSF

We expose the cells (grown in 50 ml bottles) to a toxin and wash it two times with PBS and for each time we lysate the cell culture adding a cockatil buffer and lysate buffer to each sample. We proceed to homogenize with a tuberculin syringe. Then a 15 minutes centrifugation at 8000 rpm at 4°C. Then we separate the supernatant from the pellet that will correspond to the nucleus fraction.
Then we centrifuge at 100000g for 1 hr at 4°C, and we separate the supernatant and the pellet. We add to the pellet 80 ul of lysis buffer with 1% of triton x-100.


We then proceed with the quantification which sometimes is really scarce of protein.

I'm wondering if anyone that works with protein kinase could help me find a better way to do my experiment.



#100221 Compartmentalization of signal transduction cascades

Posted Inmost sun on 10 February 2011 - 12:34 PM

f.i. by compartmentalization of second messengers and enzymes...


View PostDrABK, on 03 February 2011 - 10:36 AM, said:

Any ideas on how this occurs?  Been batting around some ideas but would like some input.



#100220 Osmolarity

Posted Inmost sun on 10 February 2011 - 12:24 PM

I think itīs more in the range of 350 mOsmol... :blink:

View Postsamita, on 18 January 2011 - 09:08 AM, said:

This solution

160 NaCl
2.5 KCl
1 CaCl2
2 MgCl2
10 HEPES
10 Glucose

has an osmolarity of about 320, how to calculate it from the molarity of the ionc composition.



#97291 Transgenic mouse model to measure Ca2+ in confocal

Posted Inmost sun on 12 January 2011 - 09:05 AM

does anyone know a transgenic mouse model to measure Ca2+ levels in neuronal tissue by confocal microscopy (probably by FRET? any hint will help...




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