I have done some aa alignment of four different proteins. Now, I want to color annotate that such the identical amino acids will be in X color and functionally similiar amino acids in a different color. How do I do that?
Jalview has color by percentage identity where it colors based on whether all the sequences have the same amino acid etc but I want something (and have seen it on papers) where they color residues based on functional similarity (so V, I, L may be colored if they are at the same position on different proteins0.
plasmodelMember Since 07 Jun 2009
Offline Last Active Feb 04 2013 03:48 PM