Posted 23 July 2009 - 07:35 AM
I have to analyze a list of genes verifying if there's Gene Ontology Term enrichment and compare the frequency of each term to the one in the human genome (possibly obtaining a chart or a table).
Does anybody know any good and reliable software to do this?
Thanks in advance,
Posted 23 July 2009 - 09:43 PM
This is a good option too, in case, if you don't understand how to analyze results further. I am more looking for a pie chart and author of Onto-Express claims that its possible with their program.
Edited by noelmathur, 23 July 2009 - 09:44 PM.
Posted 23 July 2009 - 11:34 PM
many thank to HomeBrew and noelmathur for the help, the David suite seems to be suitable to accomplish the tasks that I have, even seems to have some troubles recognizing and categorizing some genes of my list. I have not still tried using Onto-Express, if I understand correctly it seems to me to be a microarray-analysis oriented software, the fact is I don't have microarray data, but just a list of gene I've obtained through various in silico analysis.
Until now I used the Generic Gene Ontology Term Mapper to generate the ontologies and calculate the frequency of association of my genes with them, but it is unable to recognize some genes...
Does anybody know any other tools that I could use?