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How to define the domans in protein sequence


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3 replies to this topic

#1 samita

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Posted 28 January 2009 - 09:27 AM

How can I define the domains in my protein sequence. I blast search but i did not find as much infromation as I was expecting.
I shall be very thankful to you for your kind reply.
best regards

#2 dpo

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Posted 28 January 2009 - 02:11 PM

there are a number of search tools for domains grouped at ExPASy (http://www.expasy.ch/tools/) - Pattern and profile searches

#3 T C

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Posted 28 January 2009 - 08:08 PM

Hello

CDD:
http://www.ncbi.nlm....e/cdd/cdd.shtml

If its a NRPS or PKS, try this:

http://www.nii.res.in/nrps-pks.html

Best
TC

#4 Dimilletronc

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Posted 03 February 2009 - 06:57 AM

Try ELM database search. It gives the domains and potential binding partners.




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