SDS page running strangely
Posted 05 October 2004 - 04:07 AM
I'm having problems running SDS Page ( 4% Stacking gel and 12% resolving).
the problem is that the gel is running strangely. The high molecular weight markers migrates normally, but the molecular weights under 50 Kda are migrating very strangely as vertical bands. (They should migrate normally on a 12% SDS page).
Can this be due to a problem in polyacrylamide ?? or Voltage??
Posted 05 October 2004 - 09:18 AM
hmmm. the only thing that comes to my mind is, that when i ran some samples with high ionoic strength (after TCA precipitation), the lanes tended to run together in a funnel-like shape.
so a single lane would look like this (the black part is representing the protein):
o-------o high molecular weight (~150kDa)
oooo.oooo low molecular weight (10kDa)
I got rid of that by using bigger wells in the gel, and using bigger gels, leaving 1 well empty in between 2 samples.
Edited by jadefalcon, 06 October 2004 - 12:41 AM.