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Agilent Microarray Data Analysis Normalization??

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#1 kwiggins



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Posted 21 December 2018 - 01:01 PM

Hi all!


I am very new to the field of microarrays and need help sorting through data.  I have a dataset that was produced on an Agilent 4x44K two color array that has already been normalized with LOWESS to obtain M and A values.  However, half of the samples have M/A values, and the other half have maM/maA values.  I am unfamiliar with this- does anyone know how the maM/maA values are calculated or why?  I was hoping there was a way to back-calculate these values so that the dataset is uniform with only M and A values instead.


Thanks so much for your help everyone!


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