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List of gene based on expression patterns ?

expression genes EST

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#1 alexdropd

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Posted 09 August 2018 - 06:44 AM

Hi everyone,

 

This is my very first message here, this seems to be a great forum ! 

 

So here's the thing. I have a gigantic list of variants (around 10 000) and I need to filter the variants that are in genes expressed in the ovary or testis in a predominant manner.

 

Would anyone know a way to do this, by any chance?

 

Thank you all so much,

 

Alex.


Edited by alexdropd, 09 August 2018 - 06:45 AM.


#2 bob1

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Posted 09 August 2018 - 08:36 AM

There are a number of databases that contain this sort of information. The expression atlas at EMBL should be a good place to start. Having said that, I would suggest that you learn some bioinformatics automation approaches to do this - 10,000 is a lot to do manually.






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