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How to match the alleles between LD SNP marker

SNP Linkage disequilibrium

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#1 Tszki



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Posted 20 April 2016 - 10:13 PM

I am doing some analysis based on SNP marker. For some of the markers I needed which is not on the beadchip I am using. Therefore, I need to find LD markers to replace. But I want to know whether there is any database or any way that I can match the allele between the two markers ( the original one and the LD one). I am now using the allele frequency to match the two LD markers.

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