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problem with RNA conjugate secondary structure

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#1 mahrak



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Posted 27 September 2015 - 04:03 AM

hello every body


I have been trying to use RNAfold and rnacomposer webservers to predict the secondary and tertiary structure of a RNA conjugate that consists of a single stranded RNA aptamer attached to a double stranded siRNA and I simply don't know how to input the sequences so that the server knows that a part of a molecule is single stranded and the other part is double stranded, I know it sounds stupidunsure.png



really struggling and appreciate your response ASAP.

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