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Question regarding protein conservation among similar genes


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#1 Mohamed 1984

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Posted 24 August 2015 - 12:07 AM

Dear All, 

 

I have protein sequence of one gene and I would like to see how close and far is it from similar protein of the same genes but diffectent virus. I did phylogenetic analysis on the protein level, but I need an online tool or software that enable more facination or giving more detailed picture than simple alignment. 

 

 

Thanks 



#2 Rosewater

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Posted 24 August 2015 - 02:07 PM

Have you tried BLASTP on the NCBI website?  It is a simple alignment, but will identify conserved protein motifs.



#3 Mohamed 1984

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Posted 25 August 2015 - 12:48 AM

Could you provide a graphical online tool or software 






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