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How to analyze metabolomics mass spec type data: pathway mapping, fold changes,


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#1 sialic acid

sialic acid

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Posted 27 September 2014 - 05:45 PM

I used a core facility to run a metabolomics experiment, and essentially all I got back was just a huge spreadsheet with relative intensities for each metabolite.  Is there a crude and quick methods I can use in order to determine fold changes and map the metabolites to their respective pathways? Many of the metabolites were given KEGG ID numbers (a large number do not though), so is there a way to use KEGG to do pathway mapping and to generate say a heatmap in order to make the data much easier to understand?






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