I have carried out whole genome DNA methylation by NGS . This was done by the service provider. The data provided by them says the methylation pattern in upstream region and inside the gene.
Now my questions are
1. How to find out the methyated sites in the promoter region?
2. How to find out the methylation region in the inside region?
3 How to interpret the data?
4. How much fold change of methylation is acceptable between the control and experimental?
I new to this field , pl explain