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[Lali]

Hello everybody.
I am new in the field of molecular biology and I have to classify an enormous bank of fungi and bacteria using some fingerprinting technique but I want to be able to compare my results, so my questions are:
(1) What is the best way to fingerprint? Is it RAPD's, AFLP´s, rybotiping, etc?
(2) Is there any well documented fingerprint-databank on filamentous fungi? I found one for bacteria at http://www.riboprinter.cornell.edu/
I would really appreciate any comments, I need help!     
Thanks