Jump to content

  • Log in with Facebook Log in with Twitter Log in with Windows Live Log In with Google      Sign In   
  • Create Account

Submit your paper to J Biol Methods today!
- - - - -

SNPs analysis

SNP analysis bioinformatics

  • Please log in to reply
1 reply to this topic

#1 Lj Lee

Lj Lee


  • Active Members
  • Pip
  • 13 posts

Posted 30 June 2014 - 10:54 PM

I have done part of the bioinformatics analysis of my Illumina HiSeq DNA-seq data, all of them were filtered, aligned and SNPs were called out. I'm using AVADIS NGS software to do all the analysis. Now I get a lot of output data(all the SNPs) from my different 3 groups of subject. Any idea on what kind of downstream analysis I can do to compare within these 3 groups? I get quite a number of known and novel SNPs from all these 3 groups. A bit confusing on what to do next as I'm still new in this. 


Many thanks. biggrin.png

#2 jerryshelly1



  • Global Moderators
  • PipPipPipPipPipPipPipPipPipPip
  • 328 posts

Posted 01 July 2014 - 07:22 AM

You could either organize them into groups or just analyze them separately. Feed your results into SeattleSeq and it will return you a spreadsheet that gives the standard dbSNP information. From there, you can compare the frequencies within the population and determine which SNPs are novel

Home - About - Terms of Service - Privacy - Contact Us

©1999-2013 Protocol Online, All rights reserved.