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protein structure visualisation

protein software visualisation

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3 replies to this topic

#1 h.botond

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Posted 29 April 2014 - 12:06 AM

Can somebody recommend me a software which can assembly, stick a predicted pretein in a homotrimer form, which may be the naturel form of that protein. The structure is predicted in monomer form and it is in a pdb file format but and I want to visualize correctly, in trimer for which may be the naturel form of that protein.

Thanks for every helps and tips. 



#2 mdfenko

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Posted 29 April 2014 - 04:19 AM

maybe one of the software packages linked on this expasy page?


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#3 h.botond

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Posted 30 April 2014 - 04:33 AM

Thanks for the quick and useful answer. That portal is a really good starting point.



#4 macrox

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Posted 07 May 2014 - 06:59 AM

Sorry for the late reply. You can use the MakeMultimer server (or download the Python script for a local run) to generate a PDB with biologically relevant composition - providing that the PDB file in question contains the BIOMT transformation matrix.

Link: http://watcut.uwater...s/makemultimer/


Edited by macrox, 07 May 2014 - 06:59 AM.






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