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Do homologous arms need to overlap right at the DSB for knock-in


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#1 Ahrenhase

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Posted 17 April 2014 - 05:24 PM

So I'm attempting this CRISPR/Cas9 system to knock in a gene at the Rosa26 locus. I will be using 750-1000bp homologous arms on each side.  My question is do the homologous arms need to overlap right at the double strand break or can I go up (5' arm) or down (3'arm) a little?



#2 seanspotatobusiness

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Posted 19 August 2014 - 09:22 AM

My understanding is that the efficiency is optimal when the homology arms extend all the way to the DSB but I know that this does not have to be the case in order to achieve HDR (it was achieved at our lab without such a perfect donor). I don't have any numbers to give you though, regarding how far you can go and I don't know how rapidly efficiency drops.






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