I am looking for a program that I can use to check whether certain sequences are present in my plamids.
The problem is: when 1 amino acid is different than I can not find the sequence in my plasmid.
I want a program that, for example, would still "match" the sequences while mentioning that 1 base is different.
for example, the sequence of my plasmid is:
and the "gene" is: TGTGTCCGT, than I would not find it because I have that G rather than a C.
Any ideas or suggestions?
I just want to check for certain genes even if there is a small difference.