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structure prediction of a Protein with disulfide bond?

Protein modeling disulfide bond I-TASSER

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4 replies to this topic

#1 Mariam

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Posted 26 January 2014 - 09:12 AM

Hello,
I am writing to ask you some questions regarding I-TASSER protein modeling server. I have designed a protein sequence which consists of a iRGD motif. As the related papers indicate this motif has two Cys that form disulfide bond to make  the motif circular. After protein 3D structure prediction by I-TASSER server, the predicted protein model did not show this disulfide bond. I would like to know if generally the server is able to predict the disulfide bonds. If not, is there any protein structure prediction server which can predict the difulfide bonds?
Thanks


#2 Inbox

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Excellent

Posted 26 January 2014 - 11:51 PM

http://clavius.bc.ed...lotelab/DiANNA/



#3 mdfenko

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Excellent

Posted 27 January 2014 - 04:37 AM

this page in expasy may contain software that you can use:

 

http://www.expasy.or..._bioinformatics

 

or this page:

 

http://www.expasy.or...otein_structure


Edited by mdfenko, 27 January 2014 - 04:38 AM.

talent does what it can
genius does what it must
i do what i get paid to do

#4 Mariam

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Posted 27 January 2014 - 10:22 AM

Thanks a lot. It is exactly what I was searching for. 



#5 Mariam

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Posted 27 January 2014 - 10:46 AM

this page in expasy may contain software that you can use:

 

http://www.expasy.or..._bioinformatics

 

or this page:

 

http://www.expasy.or...otein_structure

Thanks a lot for introducing useful links







Also tagged with one or more of these keywords: Protein modeling, disulfide bond, I-TASSER

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