Im studying a protein involve in transcription activation in yeast. The cristalographic structure of it human version was solved by others authors by X-ray and NMR. Now, we are research the functional division of its differents domains and we need a first aproach to start to design new experiments.
We have a set of factors (aproximately 20) that could be associated with our protein. We have confirmed that one of those factors is attached to our protein, but we do not know to which domain does it.
I would like to known if ithere is a software to help us to find putative regions inside of structure that could interact with others protein (including itself).
Thanks in advance.