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SNP discovery

SNP chip

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#1 Anpu

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Posted 14 October 2013 - 05:29 AM

Hello everyone!

 

I have a question regarding SNPs and I hope I have posted this in right section.

 

So here is my question. Is there available any chip or something that I could scan 4 genes for SNPs?

 

So NOT the whole genome scan but CUSTOM scan for lets say 4 - 10 genes?

 

Thank you for answers and help!

 

Regards.

 

Andrej



#2 jerryshelly1

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Posted 14 October 2013 - 11:04 AM

All available human SNPs are on UCSC (hg19). If you have the DNA, you could sequence your genomic DNA.



#3 pcrman

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Posted 14 October 2013 - 09:39 PM

Since you only have 4 genes to scan, the most cost-effective method is sequencing. You have to design primers to amplify different regions of the genes (you can focus on exon only) and then sequence the resulted DNA.  



#4 Anpu

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Posted 14 October 2013 - 11:07 PM

OK. Thank for answers!

 

I will confront with this challenge (as we in academia say) ;)







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