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weblogo problem

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#1 alchemic



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Posted 24 September 2013 - 03:26 AM



I have a problem with generating weblogo from many sequences.


So I want to obtain a consensus sequence, but the problem is that I have more than 10000 sequences, and as far as I am know, it is not possible to do that with such huge amount of sequences usong WebLogo software.

Does anyone know a solution to my problem.

Or sobebody know the program in which I can introduced the numbers each nucleotide occur in each possition, and then create a weblogo (so the number or records will not be a problem any more).

User friendly interfence would be most desired as I am not a bioinformatics:))


Thanks for any replies.



#2 Felipillo



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Posted 11 October 2013 - 07:39 PM

Are you looking for motifs? Then you can use MEME you get a weblogo from each motif

Chance favors the prepared mind
Louis Pasteur.

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