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weblogo problem


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#1 alchemic

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Posted 24 September 2013 - 03:26 AM

Hello,

 

I have a problem with generating weblogo from many sequences.

 

So I want to obtain a consensus sequence, but the problem is that I have more than 10000 sequences, and as far as I am know, it is not possible to do that with such huge amount of sequences usong WebLogo software.

Does anyone know a solution to my problem.

Or sobebody know the program in which I can introduced the numbers each nucleotide occur in each possition, and then create a weblogo (so the number or records will not be a problem any more).

User friendly interfence would be most desired as I am not a bioinformatics:))

 

Thanks for any replies.

 

 



#2 Felipillo

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Posted 11 October 2013 - 07:39 PM

Are you looking for motifs? Then you can use MEME you get a weblogo from each motif


Chance favors the prepared mind
Louis Pasteur.




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