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software to predict binding sequence

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#1 soymilk14



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Posted 17 July 2013 - 01:28 AM

hello everybody,

i just have a basic question on what software can i use if i want to predict or locate a potential binding element in the promoter region of a certain gene. my questions are two:

1. what software to use to identify a protein binding sequence for example GCCAGGGxxxxGACTCTTT in the promoter region of a gene ?

2. how can i verify or identify that it is indeed the promoter region of the gene?

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