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DNA Methylation and genomic variation

Methylation variation

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2 replies to this topic

#1 marakeby

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Posted 06 March 2013 - 12:08 PM

I am trying to study the relationship between epigenomic and genomics variations. Namely I am interested in the relationship between methylation and indel variation. I am searching for data set that contains both methylation data and indel (or SNP) data for the same genome. I have found many SNP datasets however they are collected from different genomes. The SNP data that come from single genome is protected and I cannot downnload it. any ideas?
Thanks for your help.
Regards

#2 pcrman

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Posted 06 March 2013 - 12:25 PM

Sounds like an interesting idea. Which database are you trying to download SNP data from? NCBI FTP server should allow you to download SNP data.

#3 et2b

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Posted 26 August 2013 - 06:02 AM

Hi try the HAPMAP data, some have been bisulfite sequenced (publication in PLos genetics if I remember, and some whole genome BS in the epigenome project) with hiseq and hiseq 100bp paired-end data is available from 1000 genomes.

best







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