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consensus sequence in ClustalX?
Started by coral_tech, Oct 05 2012 09:17 AM
multisequence alignments
1 reply to this topic
#1
coral_tech
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Posted 05 October 2012 - 09:17 AM
I'm running an alignment of multiple sequences in ClustalX. All I want is to copy a consensus sequence that I can use to design a primer set with. This might be a simple question, but where is the consensus sequence? All I see are the alignments of my 17 sequences. None of the program menus have an option for showing a consensus. Any suggestions would be greatly appreciated- Thanks!
#2
Adrian K
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Posted 15 October 2012 - 04:28 PM
I use Unipro UGENE. It had integrated ClustalW function (same algorithm as ClustalX, if I remember correctly) and you can easily export your consensus from there.
There are lots of web tutorial, or you can always ask in the forum or PM me and I do my best to help.
All the best.
There are lots of web tutorial, or you can always ask in the forum or PM me and I do my best to help.
All the best.
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..."best of our knowledge, as far as we know this had never been reported before, though I can't possible read all the published journals on earth, but by perform thorough search in google, the keywords did not match any documents"...
"what doesn't kill you, makes you stronger"---Goddess Casandra reminds me to be strong
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..."best of our knowledge, as far as we know this had never been reported before, though I can't possible read all the published journals on earth, but by perform thorough search in google, the keywords did not match any documents"...
"what doesn't kill you, makes you stronger"---Goddess Casandra reminds me to be strong
"It's all just DNA. Do it."---phage434
