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consensus sequence in ClustalX?

multisequence alignments

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#1 coral_tech

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Posted 05 October 2012 - 09:17 AM

I'm running an alignment of multiple sequences in ClustalX. All I want is to copy a consensus sequence that I can use to design a primer set with. This might be a simple question, but where is the consensus sequence? All I see are the alignments of my 17 sequences. None of the program menus have an option for showing a consensus. Any suggestions would be greatly appreciated- Thanks!

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  • ClustalX alignment 10.5.2012.jpg


#2 Adrian K

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Posted 15 October 2012 - 04:28 PM

I use Unipro UGENE. It had integrated ClustalW function (same algorithm as ClustalX, if I remember correctly) and you can easily export your consensus from there.
There are lots of web tutorial, or you can always ask in the forum or PM me and I do my best to help.

All the best.

Attached Thumbnails

  • alignwithclustalW.gif
  • copyconsensus.gif

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